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User guide

This guide covers the web application after an operator has installed JARVIS. It is written for individual researchers, families, and small teams sharing one self-hosted instance.

What it does

  • Add papers from configured sources or by URL, DOI, title, or upload.
  • Search and ask questions across analyzed papers with linked citations.
  • Review citation and knowledge graphs and possible contradictions.
  • Receive scheduled Pulse recommendations for research topics.
  • Create and review spaced-repetition cards, notes, and projects.
  • Optionally connect a Telegram bot.
  • Use separate user and administrator accounts on a shared instance.

Who this manual is for

This guide is for researchers, family members, and small teams using an existing JARVIS instance. Operators should start with the installation guide, then return here for first sign-in and account setup.

Operators (people who install and maintain the system) should also read:

  • DEPLOYMENT.md — installation, the five access choices, Docker Compose configuration, and operations.
  • SECURITY.md — hardening checklist, secret management, and known residual risks.

These documents are part of the repository and are available in the Get Started and Operate sections of this site.

Manual organisation

Page What it covers
Quick start The one-screen happy path: install, create an admin, and analyze your first paper
First sign-in and setup Create the first administrator, invite family, and add the first paper
Access from other devices Choose localhost, private HTTPS, LAN diagnostics, Cloudflare, or your own domain
Passkeys Add, remove, use, and recover from passkeys with or without email
Navigation The simple and full sidebars, the three search inputs, jobs, and the focus timer
Home & My Day The focused daily page, and the Home dashboard
Papers & Discover Inbox, saved papers, Discover, and Trash
Paper Detail The reading view: summaries, evidence anchors, related work, notes, and per-paper chat
Ask (Cross-paper RAG) Ask questions that span your entire library
Pulse Deck Daily recommendation deck, card rating, and schedule configuration
Projects Organising papers into named projects
Knowledge Graph Interactive concept-level knowledge graph
Citation Graph Paper-level citation network explorer
Extraction Table Structured data extracted from papers
Learning Cards FSRS spaced-repetition review and card library
Analytics Reading activity charts and corpus statistics
Settings Account and appearance, sources, topics, automation, and integrations
What your hardware gets you How detected hardware maps to model recommendations
Hardware support matrix Supported GPU vendors and acceleration status
Telegram Pairing your Telegram account, the commands, and the admin bot token
Backup and restore Keep off-site restore points and recover the instance (admin)
Admin and multi-user operation Invite users, manage access, health, backups, and logs (admin only)